1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ataggcattttgcattgttatttaaaaatccttattttctgtttcatatcaacttaaaatctgaacatttttcatgtgtattctccttttcctggtgcagCTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGGAAGTTCTCTTTTGATGCTTTTACACACAAAAAAGCAG
species | Glycine max |
transcript | GLYMA04G42740.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCGGGGGTTTGCTCGTCAATGACACTGCCTTACAT CTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTEST: gi|193343690|gb|FK311478.1|FK311478
genomic: GCCGGGGGTTTGCTCGTCAATGACACTGCCTTACATgtaatatttg ... cctggtgcagCTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
EST: GCCGGGGGTTTGCTCGTCAATGACACTGCCTTACAT CTTGTGGTTGATACCTTGCCATTTGGGGGEST: gi|193689352|gb|FK630471.1|FK630471
genomic: GCCGGGGGTTTGCTCGTCAATGACACTGCCTTACATgtaatatttg ... cctggtgcagCTTGTGGTTGATACCTTGCCATTTGGGGG
EST: GCCGGGGGTTTGCTCGTCAATGACACTGCCTTACAT CTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTEST: gi|208105740|gb|GD906977.1|GD906977
genomic: GCCGGGGGTTTGCTCGTCAATGACACTGCCTTACATgtaatatttg ... cctggtgcagCTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
EST: GGTTTGCTCGTCAATGACACTGCCTTACAT CTTGTGGTTGATACCTTEST: gi|193460756|gb|FK427525.1|FK427525
genomic: GGTTTGCTCGTCAATGACACTGCCTTACATgtaatatttg ... cctggtgcagCTTGTGGTTGATACCTT
EST: GGTTTGCTCGTCAATGACACTGCCTTACAT CTTGTGGTTGACACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
genomic: GGTTTGCTCGTCAATGACACTGCCTTACATgtaatatttg ... cctggtgcagCTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
atatcaacttaaaatctgaacatttttcatgtgtattctccttttcctggtgcagCTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGGAAGTTCTCTTTTGATGCTTTTACACACAAAAAAGCAG
tgtattctccttttcc CT-rich tract
aacttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataggcattttgcattgttatttaaaaatccttattttctgtttcatatcaacttaaaatctgaacatttttcatgtgtattctccttttcctggtgcagCTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGGAAGTTCTCTTTTGATGCTTTTACACACAAAAAAGCAG
- -ggcattt
- - - - - tgcattg
- - - - - - - - - - - -aaaaatcc
- - - - - - - - - - - - - - - - - - - ctgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgaac