1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgcattattccccgtgaaaagaggtcctccattccccttgtctttttctctttatcttcagtttcataaacatttaaatttgaataccatgatttcagGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCAGAACCAGGGAGGATAAACCCACTCATTCCACCACCACCAGCATCAAAG
species | Glycine max |
transcript | GLYMA04G42250.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCEST: gi|10237832|gb|BE806720.1|BE806720
genomic: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAGgtgaaccccc ... atgatttcagGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGC
EST: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCEST: gi|151406413|gb|EV276228.1|EV276228
genomic: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAGgtgaaccccc ... atgatttcagGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGC
EST: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCEST: gi|26048841|gb|CA785294.1|CA785294
genomic: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAGgtgaaccccc ... atgatttcagGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGC
EST: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCEST: gi|15662595|gb|BI699966.1|BI699966
genomic: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAGgtgaaccccc ... atgatttcagGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGC
EST: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCEST: gi|14999987|gb|BI320801.1|BI320801
genomic: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAGgtgaaccccc ... atgatttcagGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGC
EST: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGC
genomic: AACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAGgtgaaccccc ... atgatttcagGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGC
ttttctctttatcttcagtttcataaacatttaaatttgaataccatgatttcagGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCAGAACCAGGGAGGATAAACCCACTCATTCCACCACCACCAGCATCAAAG
agtttcataaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgcattattccccgtgaaaagaggtcctccattccccttgtctttttctctttatcttcagtttcataaacatttaaatttgaataccatgatttcagGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCAGAACCAGGGAGGATAAACCCACTCATTCCACCACCACCAGCATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- tgcatta
- - - - -ttccccg
- - - - - - - - -gaaaagag
- - - - - - - - - - - - - tcctcca
- - - - - - - - - - - - - - - - -ttcccct