1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagtgccaatcatttttttgttgagaaatgcgatttacatatggtttatttagatatattggtgatggtgtgttgtccaacactcttcctttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTTGTGAATCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCAC
species | Glycine max |
transcript | GLYMA04G41600.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTEST: gi|254327482|gb|GR837105.1|GR837105
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTEST: gi|254318082|gb|GR832250.1|GR832250
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTEST: gi|18040670|gb|BM308964.1|BM308964
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAAGGCCGCCTGTTGATTTEST: gi|51338286|gb|CO982152.1|CO982152
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTEST: gi|254325923|gb|GR838804.1|GR838804
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
ttatttagatatattggtgatggtgtgttgtccaacactcttcctttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTTGTGAATCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCAC
cactcttcctttgc CT-rich tract
tagatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgccaatcatttttttgttgagaaatgcgatttacatatggtttatttagatatattggtgatggtgtgttgtccaacactcttcctttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTTGTGAATCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - -ccaatca
- - - - - - - - - - - - gaaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -attggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtg