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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccatgaactgaaggtatgataattctatattgcattcaaagatcgctgactgtcaaatccatctgatgcagTAGAGAATCAGTTCTTCATCAACATAAAAGGCCTCTCCCTCCACCTAATGAAGTAATACATCATGATAATGCACGCATGGCAATTCCGCACATGCCAAAT

Basic information

species Glycine max
transcript GLYMA04G38830.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024262|gb|CX711003.1|CX711003
EST:     ATGGAAATTCCATTGCAGTACCGGGCAGCCCAAAATATACAACTTAACGA                         TAGAGAATCAGTTTTTCATCAACATAAAAGGCCTCTCCCTCCACCTAATGA
genomic: ATGGAAATTCCATTGCAGTACCGGGCAGCCCAAAATATACAACTTAACGAgtaagccatg ... tctgatgcagTAGAGAATCAGTTCTTCATCAACATAAAAGGCCTCTCCCTCCACCTAATGA
EST: gi|21677101|gb|BQ629452.1|BQ629452
EST:     ATGGAAATTCCATTGCAGTACCGGGCAGCCCAAAATATACAACTTAACGA                         TAGAGAATCAGTTCTTCATCAACATAAAAGGCCTCTCCCTCCACCTAATGA
genomic: ATGGAAATTCCATTGCAGTACCGGGCAGCCCAAAATATACAACTTAACGAgtaagccatg ... tctgatgcagTAGAGAATCAGTTCTTCATCAACATAAAAGGCCTCTCCCTCCACCTAATGA
EST: gi|15000509|gb|BI321323.1|BI321323
EST:     ATGGAAATTCCATTGCAGTACCGGGCAGCCCAAAATATACAACTTAACG-                         -A-AGAATCAGTTCTTCATCAACATAAAAGGCCTCTCCCTCCACCTAATGA
genomic: ATGGAAATTCCATTGCAGTACCGGGCAGCCCAAAATATACAACTTAACGAgtaagccatg ... tctgatgcagTAGAGAATCAGTTCTTCATCAACATAAAAGGCCTCTCCCTCCACCTAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataattctatattgcattcaaagatcgctgactgtcaaatccatctgatgcagTAGAGAATCAGTTCTTCATCAACATAAAAGGCCTCTCCCTCCACCTAATGAAGTAATACATCATGATAATGCACGCATGGCAATTCCGCACATGCCAAAT
                                         tccatct  CT-rich tract
     attctatatt  TA-rich tract