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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcataattttttctctattgtctggactctggatgctgaatgtttccttgatgaaaagttatttttcaccatgtttctctggcacgaactgggtgtgtacttacaagttacatccaacactaacaatactatggtaccattgcagCAAATGGTGGCCACTCTAGATAGCATTAGAAGAAAACAAAGTAGTTGGGCTCATCAATTCGGTTGTCATATCGAAATTAAAATGATGTGTGGGGGCAGCC

Basic information

species Glycine max
transcript GLYMA04G36610.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004304|gb|DB984778.1|DB984778
EST:     CTCTCAAAATGAGGATCCAATATAAGAAGTGTTTATGTTACAAAGCCAAG                         CAAATGGTGGCCACTCTAGATAGCATTAGAAGAAAACAAAGTAGTTGGGCT
genomic: CTCTCAAAATGAGGATCCAATATAAGAAGTGTTTATGTTACAAAGCCAAGgtcataattt ... accattgcagCAAATGGTGGCCACTCTAGATAGCATTAGAAGAAAACAAAGTAGTTGGGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtgtgtacttacaagttacatccaacactaacaatactatggtaccattgcagCAAATGGTGGCCACTCTAGATAGCATTAGAAGAAAACAAAGTAGTTGGGCTCATCAATTCGGTTGTCATATCGAAATTAAAATGATGTGTGGGGGCAGCC
                           cactaac  putative branch site (score: 1)
                              taacaata  TA-rich tract