Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggagagatgatatttgttattattggtagtttaataaagacctctttcttaagtgaaatatggctaaaaatttaattgttgaaaaatcttgccaattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCATTTACTGCCAATGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAACCTC

Basic information

species Glycine max
transcript GLYMA04G30350.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G30350.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G20980.2 (Arabidopsis thaliana), 3'ss of exon 9
gtgaggagagatgatatttgttattattggtagtttaataaagacctctttcttaagtgaaatatggctaaaaatttaattgttgaaaaatcttgccaattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCATTTACTGCCAATGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAACCTC
                           ||| | | ||    |  |    ||  | | | |||  |   | |   ||       ||| |   | |     | ||||| || || ||||| ||||  || || |||||  | ||||||||||| || ||| | ||||||||||| || |||||||| |||||||||||||| || |
--------------------------gtgggaatataccttaacctaggtttattattcaaac-tatttcatttttacccccctgatatgacatagtcctgcagAGAAACGATATGGTGGAGTTTTTCGGTGAGCAGCTGTCTGGCTTTGCTTTCACTTCGAATGGGTGGGTCCAGTCATATGGGTCCCGCTGTGTCAAGCCAC

upper sequence: GLYMA04G30350.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 3'ss of exon 9
gtgaggagagatgatatttgt-tattattggta----gtttaataaagacctctttcttaagtgaaatatggctaaaa--atttaattgttga-----aaaatcttgccaattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCATTTACTGCCAATGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAACCTC
||||       |  || || | ||  |||  |     | || ||    |  | ||| ||| | |||| | || | |||  |||| |||||        ||   ||||   || ||||| ||||||||||||||||||||||| ||||||||||| || ||||| || |||| |||||||||||| ||||| ||||| ||||| |||||||| || |
gtgatttctcttcctaattatctaaaattaattcaatgcttcatggctatat-tttgttatgggaaagaaggtttaaataatttcattgtaatttgtcaatggcttgatgatgcagAGAAATGACATGGTTGAGTACTTTGGGGAGCAATTATCAGGTTTTGCCTTCACTGTCAATGGGTGGGTCCAATCTTATGGGTCCCGTTGTGTCAAGCCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348382|gb|BI973977.1|BI973977
EST:     AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCCGAG                         AGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCATTT
genomic: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCCGAGgtgaggagag ... gccaattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttaagtgaaatatggctaaaaatttaattgttgaaaaatcttgccaattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCATTTACTGCCAATGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAACCTC
                                         tcttgcc  CT-rich tract
                   taaaaatttaattgtt  TA-rich tract