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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttcttaatgttgaatttgtttatattaaaaccaagttattttgtaatgtgttcagttattgttacttgaaattcatagGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACCAGGGGCTTGCAAATGTCTTCCTTAGGACGAG

Basic information

species Glycine max
transcript GLYMA04G24430.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G24430.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G318635_T01 (Zea mays), 3'ss of exon 12
gttagtttcttaatgttgaatttgtttatattaaaaccaagttattttgtaatgtgttcagttattgttacttgaaattcatagGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACCAGGGGCTTGCAAATGTCTTCCTTAGGACGAG
  || | | |  || ||| |    |  |    | |      ||   ||  | ||||||    |    |   |     ||   |||| ||||| ||||| || ||||| || || ||||||||||||||||| || || ||||| ||||| || |||||| | || |||   ||  | |||||||
-gtaatatatctatcttgcagcaatcaa----agacttgttttgagttacactgtgttttactgccatccttctgtgttgtcagGTTGCAGACTTTGGCTCACTTGAGCTTTCCCCTGTTGATGGAAGGACATTAACAGATTTTATGCACACTAGGGGCCTCCAGATGCGGTCACTGGGACGAG

upper sequence: GLYMA04G24430.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G28080.1 (Arabidopsis thaliana), 3'ss of exon 12
gttagtttcttaatgttgaatttgtttatattaaaaccaagttattttgtaatgtgttcagttattgttacttgaaat-tcatagGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACCAGGGGCTTGCAAATGTCTTCCTTAGGACGAG
|| ||||||||  || |   |||  |  | || |    || |  |      |  |  |||   |||   |||||| || |   |||||||||| ||||| || |||||||||||||| || |||||||| ||  |||| || || ||||| ||||| ||||||||||||  |||||| ||| |||
gtcagtttctt--tgatctcttttgtcctgtttagggaaaatcctc-----agttcctcataaatttagacttgatatgttgcagGTGGCAGACTTTGGATCTCTTGAACTCTCACCCGTCGATGGAAGAACTCTGACAGACTTTATGCACACCAGAGGCTTGCAAATGCATTCCTTGGGAAGAG

upper sequence: GLYMA04G24430.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 12
gttagtttcttaatgttgaatttgtttatattaaaaccaagttattttgtaatgtgttcagttattgttacttgaaattcata---gGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACCAGGGGCTTGCAAATGTCTTCCTTAGGACGAG
||| ||| ||||||  | |  || |||   ||    ||  || || || |||    || |  |||| | | || |  || |||   ||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||||| |||||||||| ||| || || || |
gttggttccttaataatta--ttatttgctttg---ccttgtgatcttttaagacttttaaatatt-tgatttaactttgatattagGTGGCAGATTTTGGCTCCCTTGAACTTTCACCTGTCGATGGAAGGACTTTGACAGATTTTATGCACACCAGGGGTTTGCAAATGTGTTCGTTGGGTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaaaaccaagttattttgtaatgtgttcagttattgttacttgaaattcatagGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACCAGGGGCTTGCAAATGTCTTCCTTAGGACGAG
         aagttattttgtaat  TA-rich tract