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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctctcttatcacacacagtatgttggattccaaatgatgccattggtcctcttagttacttttggcactttgtttatgggtttatgcatatatgtgtggctgcatatttctttgcttagtctcttttcctgaaaagggtcactctgaaacattctacagGTGATTGCTTGTGAAAACCAGGCTGTTCGCTGGACCACTCCTCTTGGTCTTCCTGTTGTACAACCATACTGTAAAACTGAACGTTATCAG

Basic information

species Glycine max
transcript GLYMA04G24350.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G24350.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 14
gttagctctcttatcacacacagtatgttggattccaaatgatgccattggtcctcttagttacttttggcactttgtttatgggtttatgcatatatgtgtggctgcatatttctttgcttagtctcttttcctgaaaagggtcactct---gaa-----acattctacagGTGATTGCTTGTGAAAACCAGGCTGTTCGCTGGACCACTCCTCTTGGTCTTCCTGTTGTACAACCATACTGTAAAACTGAACGTTATCAG
                                                      |  |  ||  || | |||  ||||  |     |||    |  ||||     |    |||  |     | |   |||||  || ||    | | | |   |||     ||||||||||||| |||||||  ||||||||  | || |  ||||| |||||||| |||||||||||  | ||||| ||||| |||| ||||||  |||  
-----------------------------------------------------gtaatgtttttttattgcatattgtgcaataaattaaat-tgaatgtcctattatg-attggtcaatgtggaacctttttatgcaagtattgaatttttggaatatggacattctacagGTTATTGCTTCAGAAAACCAACCAGTGCAGTGGACAACTCCTCTAGGTCTTCCTGTCATTCAACCCTACTGCAAAAGTGAACGGCATCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttctttgcttagtctcttttcctgaaaagggtcactctgaaacattctacagGTGATTGCTTGTGAAAACCAGGCTGTTCGCTGGACCACTCCTCTTGGTCTTCCTGTTGTACAACCATACTGTAAAACTGAACGTTATCAG
                                          aaacatt  TA-rich tract