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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgttattgcttgtatggttttatggtgttgagttttatgtgataggcaaaatgtgctaattccttgccttgttgtgtaacttaatgctatcatgaagGAGGTGGATCCGTGTGAAGACCTGACTGATGACGACATTCGTACTGCCATACAAAATGCTACTGGACCTAAATCAGCAGTGTTTGCTCCATCT

Basic information

species Glycine max
transcript GLYMA04G16340.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G16340.1 (Glycine max), 3'ss of exon 9
lower sequence: AT2G14120.3 (Arabidopsis thaliana), 3'ss of exon 10
--ttttgttattgcttgtatggttttatggtgttgagttttatgtgataggcaaaatgtgctaattccttgccttgttgtgtaacttaatgctatcatgaagGAGGTGGATCCGTGTGAAGACCTGACTGATGACGACATTCGTACTGCCATACAAAATGCTACTGGACCTAAATCAGCAGTGTTTGCTCCATCT
  || | |       | ||     | ||| |||  |||  ||  |||||||     | |  | |||     |    | || |  || |||  |    |||||||||| ||||| ||||||||| | || | ||| || ||||| ||||| ||||||||||| ||||| || | ||| ||| | |||| ||||  |
tgttgtatagagatctttacctactgatgttgtc-agtgctacttgatagg---ggtttaatgattttaaactcattagtttctctcaat-ttgctctgaaggagGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGAT

upper sequence: GLYMA04G16340.1 (Glycine max), 3'ss of exon 9
lower sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 9
-----ttttgttattgcttgtatggttttatggtgttgagttttatgtgataggcaaaatgtgctaattccttgccttgttgtgtaacttaatgctatcatgaagGAGGTGGATCCGTGTGAAGACCTGACTGATGACGACATTCGTACTGCCATACAAAATGCTACTGGACCTAAATCAGCAGTGTTTGCTCCATCT
     || | |       | ||     | ||| |||  |||  ||  |||||||     | |  | |||     |    | || |  || |||  |    |||||||||| ||||| ||||||||| | || | ||| || ||||| ||||| ||||||||||| ||||| || | ||| ||| | |||| ||||  |
ctctgttgtatagagatctttacctactgatgttgtc-agtgctacttgatagg---ggtttaatgattttaaactcattagtttctctcaat-ttgctctgaagGAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGAT

upper sequence: GLYMA04G16340.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 10
ttttgttattgcttgtatggttttatggtgttgagttttatgt--gataggcaaaatg-tgctaattccttgccttgt-tgtgtaacttaatgctatcatgaagGAGGTGGATCCGTGTGAAGACCTGACTGATGACGACATTCGTACTGCCATACAAAATGCTACTGGACCTAAATCAGCAGTGTTTGCTCCATCT
     |          |   |||| |  || | | | | ||||  | ||     |  | |||||    ||   |  || || | |  ||          || ||||||||||||| ||||| ||  |||||||||| |||||||| ||||| || || ||||| || || |||| ||| ||| | ||||  |||   
----atggagaacctcacaattttttattggtaaatctgatgtttgctaatttcagagctgctatgagctcatcaagtctgaggagatttgaatatctgtgcagGAGGTGGATCCATGTGAGGATTTGACTGATGATGACATTCGAACTGCAATTCAGAATGCAACCGGCCCTAGATCTGCATTATTTGTGCCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggcaaaatgtgctaattccttgccttgttgtgtaacttaatgctatcatgaagGAGGTGGATCCGTGTGAAGACCTGACTGATGACGACATTCGTACTGCCATACAAAATGCTACTGGACCTAAATCAGCAGTGTTTGCTCCATCT
                                  taacttaat  TA-rich tract