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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccaacttttgacttgcattagcaaacatttgaccatgattttcttttcgcaccttagaccaaattataagaaagtctttgttttaacaaatctgatttggtcacttacacttttacttgttccttaccacagGGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGATGGGGTACTGTTGGTTCTGCTGTGATAATTGTTTTACCACTAATAGAGAG

Basic information

species Glycine max
transcript GLYMA04G14790.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13790400|gb|BG652991.1|BG652991
EST:     TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAG                         GGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT
genomic: TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAGgtaaccaact ... cttaccacagGGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT
EST: gi|58017017|gb|CX703759.1|CX703759
EST:     TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAG                         GGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT
genomic: TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAGgtaaccaact ... cttaccacagGGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT
EST: gi|6341965|gb|AW164789.1|AW164789
EST:     TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAG                         GGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT
genomic: TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAGgtaaccaact ... cttaccacagGGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT
EST: gi|57575051|gb|CX548026.1|CX548026
EST:     TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAG                         GGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT
genomic: TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAGgtaaccaact ... cttaccacagGGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT
EST: gi|193520282|gb|FK476719.1|FK476719
EST:     TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAG                         GGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT
genomic: TTTCACTCTTTTGATTGTCATTCTATGGCCTATTCTCTCCCTCCCAGCAGgtaaccaact ... cttaccacagGGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttaacaaatctgatttggtcacttacacttttacttgttccttaccacagGGGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTGATTGCTATAGGATGGGGTACTGTTGGTTCTGCTGTGATAATTGTTTTACCACTAATAGAGAG
                                           tccttac  putative branch site (score: 2)
                                cttttacttgttcctt  CT-rich tract
     ttaacaaat  TA-rich tract