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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttccctgatactctctagtcaaatgagtccttgctaattatttatgttgattttaacattttttttttatctcatcagTTTTTTATGGAGCTCATGAAGGTTCCACGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCAACTTTTCTTCTCAG

Basic information

species Glycine max
transcript GLYMA04G14770.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G14770.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 9
gttttttccctgatactctctagtcaaatgagtccttgctaattatttatgttgatt-ttaacattttttttttatctcatcagTTTTTTATGGAGCTCATGAAGGTTCCACGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCAACTTTTCTTCTCAG
   |  |  ||||| |     |    ||||  | |   | |||  | ||| |||||| ||||||   ||  | | |   ||||||||||  ||||||| |||||||||||||| || |||||||| ||  | || ||| | |||||||| | ||||||   ||||
--gtgatttctgatgcctggaatatgaatgcatgc---ccaatcctgtatcttgattgttaacaaacttcatgtttgatatcagTTTTTCCTGGAGCTGATGAAGGTTCCACGAGTTGAATCCAAGTTGCGAGTATTTTCATTTAAAATAACCTTTTCAAGTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtccttgctaattatttatgttgattttaacattttttttttatctcatcagTTTTTTATGGAGCTCATGAAGGTTCCACGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCAACTTTTCTTCTCAG
                           ttttaac  putative branch site (score: 2)
                                   ttttttttttatctca  CT-rich tract
           taattatttatgttga  TA-rich tract