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...ctggacataatgtggttactatattggttttttttccctttttgttagtttgttttatatattccgtgaaagcttgtgttgcactcattttttggtttagGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTA
species | Glycine max |
transcript | GLYMA04G12490.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGT GCAAGCTATGGGTCEST: gi|15202337|gb|BI425348.1|BI425348
genomic: GGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTgtgagttctt ... tttggtttagGCAAGCTATGGGTC
EST: GGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGT GCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCAEST: gi|192303927|gb|FG993827.1|FG993827
genomic: GGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTgtgagttctt ... tttggtttagGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCA
EST: GGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGT GCAAGCTATGGGTTTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCAEST: gi|15204610|gb|BI427378.1|BI427378
genomic: GGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTgtgagttctt ... tttggtttagGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCA
EST: GGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGT GCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCA
genomic: GGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTgtgagttctt ... tttggtttagGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCA
tagtttgttttatatattccgtgaaagcttgtgttgcactcattttttggtttagGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTA
ctcatttttt CT-rich tract
tgttttatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggacataatgtggttactatattggttttttttccctttttgttagtttgttttatatattccgtgaaagcttgtgttgcactcattttttggtttagGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - tgtggtt
- - - - - - - - - - - - - - - - -ttccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactcat