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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgcatgagagtttaagagctatttcaggtgctgtttctagttatatttggctttttgctgaaagtaacctaaattttgacagCATTACGCAATATTGAATTGGCAAGCTTTCTTCGCTGGTATGTGGCTGTTGAACTTTATGATCCTGCATATGCCAAACGATTTTACTGCACTTATGAGAT

Basic information

species Glycine max
transcript GLYMA04G10090.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 9
----------------gtacatgcatgagagtttaagagctatttcaggtgctgtttctagttatatttg--gctttttgctgaaagtaaccta-aattttgacagCATTACGCAATATTGAATTGGCAAGCTTTCTTCGCTGGTATGTGGCTGTTGAACTTTATGATCCTGCATATGCCAAACGATTTTACTGCACTTATGAGAT
                 ||| || || |   || ||| | |||        || ||     |    ||||  | | |   || || | | |||  || ||| | |||||| |||||||| || ||||| |||||||| || ||||||||  | || |||||| |||||||||||||||| || || |||||||| || ||||||||
gtatgcctactgcactctacgtgaataatttttcaagtggtataatttactctattctgcatccagtttgttggtatcatcttaatgcaccctttaaattttatagCATTGCGCAATATCGAGTTGGCTAGCTTTCTCCGTTGGTATGTTACCGTGGAACTTAATGATCCTGCATATGCAAAGCGTTTTTACTGTACCTATGAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctgtttctagttatatttggctttttgctgaaagtaacctaaattttgacagCATTACGCAATATTGAATTGGCAAGCTTTCTTCGCTGGTATGTGGCTGTTGAACTTTATGATCCTGCATATGCCAAACGATTTTACTGCACTTATGAGAT
      tttctagttatattt  TA-rich tract