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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagttatttggtcctaattaaacacatacttttttggccttcaatttttgaattaacattcttgtggttttatcttgagtgtttattgcttacttgctgacatttgatctctaaaacagTTCATGGAGGTTATCAAGCTTGAAAACATGGGCTATTATAGGGACGACATGAATATACCTGGTGATGTTTTCCTCTTGCAA

Basic information

species Glycine max
transcript GLYMA04G09000.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934805|gb|BQ079835.1|BQ079835
EST:     TTGGGGGTCAGGTTATTCTTCCACTAGCCCACACAATTGAGCATGAAGAG                         TTCATGGAGGTTATCAAGCTTGAAAACATGGGCTATTATAGGGACGACATG
genomic: TTGGGGGTCAGGTTATTCTTCCACTAGCCCACACAATTGAGCATGAAGAGgcaagttatt ... tctaaaacagTTCATGGAGGTTATCAAGCTTGAAAACATGGGCTATTATAGGGACGACATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttatcttgagtgtttattgcttacttgctgacatttgatctctaaaacagTTCATGGAGGTTATCAAGCTTGAAAACATGGGCTATTATAGGGACGACATGAATATACCTGGTGATGTTTTCCTCTTGCAA
                                           tctct  CT-rich tract
               tgtttatt  TA-rich tract