1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atatatttaatactgccaaggaggtgttccttgtacacattcttttgctaggtgacttttttctgttaaaatttcccacttgttttttcttctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAATATGCGCCAAGAACTTTTCGATGCTTTACGTTCCAGAG
species | Glycine max |
transcript | GLYMA04G08560.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|20812962|gb|BQ297440.1|BQ297440
genomic: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|9901743|gb|BE610711.1|BE610711
genomic: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|13481430|gb|BG510773.1|BG510773
genomic: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: GGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|192328739|gb|FK023197.1|FK023197
genomic: GGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|22932102|gb|BU549241.1|BU549241
genomic: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|192334120|gb|FK026277.1|FK026277
genomic: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|17153142|gb|BM143075.1|BM143075
genomic: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|254322787|gb|GR839808.1|GR839808
genomic: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCTATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
tgctaggtgacttttttctgttaaaatttcccacttgttttttcttctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAATATGCGCCAAGAACTTTTCGATGCTTTACGTTCCAGAG
tttcccacttgttttt CT-rich tract
ttttttctgttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatttaatactgccaaggaggtgttccttgtacacattcttttgctaggtgacttttttctgttaaaatttcccacttgttttttcttctctttcagGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAATATGCGCCAAGAACTTTTCGATGCTTTACGTTCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - ctgccaa
- - - - - - - - - -ggaggtg
- - - - - - - - - - - - - - ccttgta
- - - - - - - - - - - - - - - - - -cacattc
- - - - - - - - - - - - - - - - - - - - - - ttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt