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...gatgtataagacccatgcatgcatgtggaagaaaaagtttcattataatcatttggttgttacctctatttattttgactacatattttttttcctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCT
species | Glycine max |
transcript | GLYMA04G08510.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG GTATTTTTGTAGCATTGACTTTGCGATTTGATGTATCTAGAGGAAAACAGCEST: gi|120494250|gb|EH222417.1|EH222417
genomic: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... tttcctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGC
EST: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG GTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGCEST: gi|192327708|gb|FK020699.1|FK020699
genomic: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... tttcctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGC
EST: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG GTATTTTTGTAGCACTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGCEST: gi|26267892|gb|CA818955.1|CA818955
genomic: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... tttcctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGC
EST: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG GTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGC
genomic: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... tttcctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGC
taatcatttggttgttacctctatttattttgactacatattttttttcctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCT
ttttgac putative branch site (score: 3)
catattttttttcctc putative PPT
tctatttattttgact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtataagacccatgcatgcatgtggaagaaaaagtttcattataatcatttggttgttacctctatttattttgactacatattttttttcctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCT
- - - - - - ccatgca
- - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactaca