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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcaatgttttcctccaggttttatgttaaaaatagtcattggtgatgaatttaattgggagaaataattttgttgacaattggaattttacatacaaactttgatgcataactatccatttcatggtgcagGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAG

Basic information

species Glycine max
transcript GLYMA04G04530.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4299173|gb|AI442866.1|AI442866
EST:     GAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAG                         GTTCTTGCNNNNNNNCCAGAGCACATTCTTCCTTTCTACTTATCATGTTGC
genomic: GAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAGgtttcaatgt ... catggtgcagGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGC
EST: gi|192303059|gb|FG994177.1|FG994177
EST:     GAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAG                         GTTCTTGCNNNNNNNCCAGAGCACATTCTTCCTTTCTACTTATCATGTTGC
genomic: GAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAGgtttcaatgt ... catggtgcagGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattggaattttacatacaaactttgatgcataactatccatttcatggtgcagGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAG
                             gcataac  putative branch site (score: 3)
                                      tccatttc  putative PPT
       aattttacatacaaa  TA-rich tract