1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagttccttgtttaggaagtaaattttctgtgtattgatggtcacgaagggtctacctctccttgtcactttatggggataataaatttatttcttacttcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTACAGTGCTGATTTTGGTAAAGACTAGAATCTATTGCAAAATTCTTGCAGAG
species | Glycine max |
transcript | GLYMA04G03180.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGCAATTCGTGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTACEST: gi|254320695|gb|GR827144.1|GR827144
genomic: CAGCAATTCGTGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTAC
EST: CAGCAATTCGTGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTACEST: gi|207815513|gb|GD788678.1|GD788678
genomic: CAGCAATTCGTGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTAC
EST: GAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTAC
genomic: GAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTAC
acctctccttgtcactttatggggataataaatttatttcttacttcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTACAGTGCTGATTTTGGTAAAGACTAGAATCTATTGCAAAATTCTTGCAGAG
ttcttac putative branch site (score: 2)
tttatttcttacttc CT-rich tract
ataataaatttatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttccttgtttaggaagtaaattttctgtgtattgatggtcacgaagggtctacctctccttgtcactttatggggataataaatttatttcttacttcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTACAGTGCTGATTTTGGTAAAGACTAGAATCTATTGCAAAATTCTTGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT