1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgcatgccctataagaactgtcacaagagctactgtgctttctgcaataaattaagttctcattttatgttgattaactatctggccttggataagcagGATGAAATTATACCACATTTGGAGCCGGGACGCCTACCATCCACTGTTGATCCAGATGCCGTACAACCACCTGACAAAGGGAGAAAAATGAACCAGCGCC
species | Glycine max |
transcript | GLYMA04G01720.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTACAAAGGTGCCTGGTGTACACCGCCAAGGATCTTTATGGACCACCCG GATGAAATTATACCACATTTGGAGCCGGGACGCCTACCATCCACTGTTGATEST: gi|10844893|gb|BF068089.1|BF068089
genomic: AGTACAAAGGTGCCTGGTGTACACCGCCAAGGATCTTTATGGACCACCCGgtactgccat ... ggataagcagGATGAAATTATACCACATTTGGAGCCGGGACGCCTACCATCCACTGTTGAT
EST: AAAGGTGCCTGGTGTACACCGCCAAGGATCTTTATGGACCACCCG GATGAAATTATACCACATTTGGAGCCGGGACGCCTACCATCCACTGTTGAT
genomic: AAAGGTGCCTGGTGTACACCGCCAAGGATCTTTATGGACCACCCGgtactgccat ... ggataagcagGATGAAATTATACCACATTTGGAGCCGGGACGCCTACCATCCACTGTTGAT
caataaattaagttctcattttatgttgattaactatctggccttggataagcagGATGAAATTATACCACATTTGGAGCCGGGACGCCTACCATCCACTGTTGATCCAGATGCCGTACAACCACCTGACAAAGGGAGAAAAATGAACCAGCGCC
gattaac putative branch site (score: 2)
attttatgttgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatgccctataagaactgtcacaagagctactgtgctttctgcaataaattaagttctcattttatgttgattaactatctggccttggataagcagGATGAAATTATACCACATTTGGAGCCGGGACGCCTACCATCCACTGTTGATCCAGATGCCGTACAACCACCTGACAAAGGGAGAAAAATGAACCAGCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -catgccc
- - - - - - - - - ctgtcac
- - - - - - - - - - - - - - - - actgtgc
- - - - - - - - - - - - - - - - - - - - ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatctg