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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtccctgaatatagtttttgactccccatacgccttatgttgcatatttatttcctaaaggaatgttttatgctgatggtttgtattctgctattattttcagGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAAT

Basic information

species Glycine max
transcript GLYMA04G01470.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os07g10150.1 (Oryza sativa), 3'ss of exon 9
gtatgtgtccctgaatatagtttttgactccccatacgccttatgttgcatatttatttcctaaaggaatgttttatgctgatggtttgtattctgctattattttcagGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAAT
      || | |  | ||||  | |   | |  ||||      | ||  | ||  |       ||  |   | | ||    |    ||| | | || | |  ||| ||||||||| ||  |||||||||| ||  |||| || ||||| ||||| ||||||||||| ||||| ||||||||| | || |||||||||||||| ||| ||
------gtacgtaga-atagcgtata--ttcttatacagaaatttttaaagatcca------gaactagcttgtcatcagaaca--ttgaactttgttgt-gtttgcagGATGAACTTTTTGAGTAATATCCTACGGGAAGAGGGTGGCTTTGAGTACAAGAAGGCTATTGTTGATTCAATTATCATACTCATTAGAGATATTCCTGAT

upper sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G178618_T01 (Zea mays), 3'ss of exon 9
gtatgtgtccctgaatatagtttttgactccccatacgccttatgttgcatatttatttcctaaaggaatgttttatgctgatggtttgtattctgctattattttcagGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAAT
|||||| |     |   |   |||  |||   | |  |    |  | | | | |   ||  | |        | |||    |   ||  | |||   |||   || ||||||||| ||| |||||||||||||  |||| || || || || || |||||||| || || || ||||||||| | || |||||||||||||| ||| ||
gtatgtatatagaagcgtg--tttgcactattctt--gttaaacatcgtaaactacctttttca--------tctata---agcattaattttcatttatctgttccagGATGAACTTCTTGAGTAATATTCTACGGGAAGAGGGAGGATTCGAGTACAAGAAAGCCATAGTTGATTCAATTATTATACTCATTAGAGATATTCCTGAT

upper sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G036034_T01 (Zea mays), 3'ss of exon 9
gtatgtgtccctgaatatagtttttgactccccatacgccttatgttgcatatttatttcctaaaggaatgttttatgctgatggtttgtattctgctattattttcagGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAAT
|||||| |     |  ||   || |  | |       |    || |   | | |   ||  | |        | |||    |   ||  | | |   |||   ||| |||||||| ||| |||||||||||||  |||| || ||||| || || || ||||| || || || ||||||||| | || |||||||||||||| ||| ||
gtatgtatatagaagcatgtcttcttgcgctagtcttgttaaatatcataaactacctttttca--------tctata---agcattaatttccatttatctgttttagGATGAACTTCTTGAGTAATATTCTACGGGAAGAGGGTGGATTCGAGTATAAGAAAGCCATAGTTGATTCAATTATTATACTCATTAGAGATATTCCTGAT

upper sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 9
-------gtatgtgtccctgaatatagtttttgactccccatacgccttatgtt-gcatatttatttcctaaa------ggaatgttttatgctgatggtttgta--------ttctgctattattttcagGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAAT
        |||       |  || |  |  || |  |    |  |  |||| ||    | ||| ||   | ||        |||||||    |   ||   |  |        || | |  |  ||||||||||||| ||| | || || ||||||||||| |||||||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| |||||||| ||| ||
gtaagtgatatcctgtttttgatgtcatcattaaaacatt-tgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcagGATGAACTTCTTAAGCAACATTCTTAGGGAAGAAGGTGGATTTGAGTACAAAAAGGCGATTGTTGATTCAATCGTGATCCTCATAAGAGATATTCCTGAT

upper sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S276_96V6.1 (Physcomitrella patens), 3'ss of exon 9
gtatgtgtccctgaatatagtttttgactccccatacgccttatgttgcatatttatttcctaaaggaatgttt-tatgctgatggtttgt--attctgctattatttt--cagGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAAT
             | |  |     | | ||  |||   ||| || |  | | |  ||  || | |  | |  || | || ||   || ||   |   ||| | | |||   |||||||||||| ||||| ||||| || || || |||||||||||||| ||||| ||| |||| || || || ||| | || |||||  | || || ||| ||
-------------atttcataggcttaatcttcatcgtcctgatatcacgtgta-atcaccaataatagttcttgtgtgatgcaagtatgatgacagtgccagtttttatgcagGATGAATTTTCTGAGCAATATCCTGAGAGAAGAAGGTGGTTTTGACTACAAAAAGTCAATCGTTGACTCTATTCTCATCCTCATCCGTGAGATTCCTGAT

upper sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S15_298V6.1 (Physcomitrella patens), 3'ss of exon 8
gtatgtgtccctgaatatagtttttgactccccatacgccttatgttgcatatttatttcctaaaggaatgttttatgctgatggtttgtattctgctattattttcagGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAAT
  | |     || |   ||              | | |  | || |    |||| |||       || ||||      ||||||       |  |||| || ||| ||| |||||||||||||| || ||| | ||||||||||| ||||| || |||||||| ||||| || || || ||  | || |||||| | || || ||| ||
-gaggcacttctaatcctatcgacatgtatgagacaggtgtgatatgtattattgattcttgtgcggtatgtgc----ctgatgacgc---tgttgctgtt-tttgcagAATGAATTTCCTGAGCAACATTTTAAGGGAGGAAGGAGGTTTCGAATACAAGAAAGCAATCGTTGACTCTATCCTTATCCTCATTCGTGAGATTCCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcctaaaggaatgttttatgctgatggtttgtattctgctattattttcagGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAAT
                                             ttattttc  CT-rich tract
                                           tattattttca  TA-rich tract