1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttctgccactccctttcttccctatgacccacgattgaacattgggtagtttatagagattggtttttttgacttagatactttttggttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCCAGAAGGAAGACCGTGACAGAGAAAGACTTCCTTGACGCAGTTAATAA
species | Glycine max |
transcript | GLYMA03G42370.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|17020809|gb|BM091843.1|BM091843
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|209718786|gb|BW671987.1|BW671987
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|5770628|gb|AI973802.1|AI973802
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGCATGTATGCTATTCGAGEST: gi|13482113|gb|BG511456.1|BG511456
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|213600067|gb|DB976026.1|DB976026
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|21595741|gb|BQ610584.1|BQ610584
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: CTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|209702900|gb|BW667435.1|BW667435
genomic: CTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|214007120|gb|DB986168.1|DB986168
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|208066660|gb|GD866417.1|GD866417
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|193429086|gb|FK396344.1|FK396344
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|193350834|gb|FK314156.1|FK314156
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG GAGCCGATATAAGGAGCGTTTGCAEST: gi|193386094|gb|FK352408.1|FK352408
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCA
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|193358738|gb|FK328416.1|FK328416
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|21601986|gb|BQ612317.1|BQ612317
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|214007458|gb|DB987315.1|DB987315
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|208164325|gb|GD961893.1|GD961893
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: TTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|213611119|gb|DB974993.1|DB974993
genomic: TTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
gggtagtttatagagattggtttttttgacttagatactttttggttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCCAGAAGGAAGACCGTGACAGAGAAAGACTTCCTTGACGCAGTTAATAA
ttttgac putative branch site (score: 3)
ctttttggttctctcc putative PPT
tttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttctgccactccctttcttccctatgacccacgattgaacattgggtagtttatagagattggtttttttgacttagatactttttggttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCCAGAAGGAAGACCGTGACAGAGAAAGACTTCCTTGACGCAGTTAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA