1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttagccattatttttccgttaattcaaagtagttttggtattaaaagatcatttatcaaatatttccttgaaattaaatttgcatttttatttttaacagGTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCGTCTTTCATGACATATGCTTCCGAACATCTTGCAATCCGATCATTTCTTAAAGGCATTGATGAG
species | Glycine max |
transcript | GLYMA03G40980.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTCCATCGTTGCCTTGTCTTTTTGGAATAACTGCTTTGTTTTTAAG GTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCGTCTTTCATGACATAEST: gi|208163339|gb|GD964855.1|GD964855
genomic: GCAGCTCCATCGTTGCCTTGTCTTTTTGGAATAACTGCTTTGTTTTTAAGgtaatttatg ... tttttaacagGTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCGTCTTTCATGACATA
EST: GCAGCTCCATCGTTGCCTTGTCTTTTTGGAATAACTGCTTTGTTTTTAAG GTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCGTCTTTCATGACATA
genomic: GCAGCTCCATCGTTGCCTTGTCTTTTTGGAATAACTGCTTTGTTTTTAAGgtaatttatg ... tttttaacagGTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCGTCTTTCATGACATA
agatcatttatcaaatatttccttgaaattaaatttgcatttttatttttaacagGTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCGTCTTTCATGACATATGCTTCCGAACATCTTGCAATCCGATCATTTCTTAAAGGCATTGATGAG
tttttattttt CT-rich tract
aaatatttccttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagccattatttttccgttaattcaaagtagttttggtattaaaagatcatttatcaaatatttccttgaaattaaatttgcatttttatttttaacagGTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCGTCTTTCATGACATATGCTTCCGAACATCTTGCAATCCGATCATTTCTTAAAGGCATTGATGAG
- agccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt