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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaacctcatcttctaatgccgtattcttttataccttaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTG

Basic information

species Glycine max
transcript GLYMA03G40440.4
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40440.4 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------------------------gtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaacctcatcttctaatgccgtattct-tttataccttaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTG
                                                     |   |      | | ||||   ||  | |  | | ||||  | || || |  ||   |  |     ||| |  |    | |||| |||      ||    ||  |  |||||| | | |||||  ||||| |||||||  | |||||||||||||||| |||   || |||||||||| |||||||||||||   || || |||||| | ||| |||| |||||||||||| ||||||||| ||
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagc-atatgatgtt-ttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtttaacttgtgaacctcatcttctaatgccgtattcttttataccttaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTG
                         ttctaat  putative branch site (score: 2)
                                      ttcttttatacctt  putative PPT
                                    tattcttttata  TA-rich tract