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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttggttacctacgcaatagaattacatttttgctctactcctttgcttaacctcactttgtggaatttcttccatgtagGTTCTGAAGGGTCAACTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTG

Basic information

species Glycine max
transcript GLYMA03G40210.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 7
----gtgttggttacctacgcaatagaattacatttttgctctactcctt--tgcttaacct---cactttgtggaatttcttccatgtagGTTCTGAAGGGTCAACTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTG
     |||| | ||| |    |   |||  |||| || ||  || |   |  |  ||||||    || ||  |  || |  |    | |||||||||||||| || |||||||| ||||||| ||| || |||   | || |||||||||||| ||  | |||||||| |||||||| || || |||||||
gtatttgtttgatacttggaaacaggaaccacatatt-gcattagttggtgatttttaacccttacatttcttataactattaatgtatagGTTCTGAAGGGCCAGCTATTTGTTGATCAATTTTGTGAGAAGCCTCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAACTTAATTTTATGGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttttgctctactcctttgcttaacctcactttgtggaatttcttccatgtagGTTCTGAAGGGTCAACTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTG
                         acctcac  putative branch site (score: 3)
                                         tttcttccat  putative PPT
                                       aatttctt  TA-rich tract