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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctataatttttgaattgtgtaatatctcactactaatatcctgacataagcataactacatatttccattgagcagTTGGTTCTAATAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATT

Basic information

species Glycine max
transcript GLYMA03G39290.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 8
---------------gtaatttctataatttttgaattgtgt--aatatctcactactaatatcctgacataagcat---aactacatatttccat-tgagcagTTGGTTCTAATAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATT
                 ||    || || || | || |||||   |  |   | | ||  ||||      |  || |    | |     |||  ||   | ||||||| |||   |  || |||||  || | ||||||||||    |||||| ||| |||| |||| ||||||||||||||||||||| ||    || |||  
gtatgggggtttgaaaaaaagaatacaaattctaaactgtgtttgaagttatatttctgttatctcttatttggctttctgaatgaccgtttgaatgccatcagTTGGATCTGCGACGGGAGAAATCACATTGTGGGAACTTGCCGCTCGAGAGAGGCTGGTTTCAAGGCCATTCAAGATATGGGATATGTCTAATTGCTCACA

upper sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------gtaatttctataatttttga-attgtgtaat-atctcactactaatatcctgacataagcataactacatatttccattgagcagTTGGTTCTAATAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATT
                                          ||||||| | ||  |     |  || || |  | | | | |   | |  || |||   | |||||  |    | | ||||||||||||||||  ||||||||| ||| ||||||||||| |||  || ||||| ||||||||  |||| | |||||||||||||||  |  |||| ||||||||
gtatgaacttctgttttctctgtatcttagtgattaaagagctaatttccaaaagatagattacagtctagttgttttattcccttttttttggcattttc-taactttaagaatactttgagcagTTGGTTCTGGTAATGGTGATATTACACTTTGGGAAGTTGCATTGCGAGAGAGGTTGGTTACAAAACAATTCAAGATATGGGACGTGACAGCTTGTTCATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315405|gb|GR825214.1|GR825214
EST:     CTCTGTGACAAGCATGGACTTTCATCCTTCTCACCCAACCTTACTTCTCG                         TTGGTTCTAATAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACA
genomic: CTCTGTGACAAGCATGGACTTTCATCCTTCTCACCCAACCTTACTTCTCGgtaatttcta ... cattgagcagTTGGTTCTAATAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatctcactactaatatcctgacataagcataactacatatttccattgagcagTTGGTTCTAATAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATT
                                         tttccatt  CT-rich tract
                              ataactacatattt  TA-rich tract