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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtaaactggacttctggtccagagacatcatatgtgatggatgatagttgctttttatcttaaacagttccttcataattgcagCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTCAACTAAGAGTTGTGAAAGCCCTCAGGGAATATCGAAATCTTTATTCTGT

Basic information

species Glycine max
transcript GLYMA03G38830.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38830.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 10
-----gtaggtaaactggacttctggtccagagacatcatatgtgatggatgatagttgctttttatcttaaacagttccttcataattgcagCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTCAACTAAGAGTTGTGAAAGCCCTCAGGGAATATCGAAATCTTTATTCTGT
      |  | || ||   ||  | |||    |  |   |   |    ||||||| ||  ||| | |  | |     |     | |  |||||||||||||||||| |||||||| || ||||||||||||||||   | || ||||||||  |||| || ||| |||  |||||||||||||| ||| ||||
gtaggatttgaaacctatgctagttgtcatatgtgaagttgattttcagatgatatttaatttctctgcttatggactgaaata-atctgcagCAATTGAGAAAACTTTGTCCCATAAGCTGGAAGATGCACGGAACTCCGTGCAACTAAGGCTTGTCAAGGCCTTCAAAGAATATCGAAATCTCTATGCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072200|gb|AW101587.1|AW101587
EST:     CTATCGGCTGGCTGATACGGGTGCAATTGTATCACTGTTAAGTAGGCTAG                         CAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTC
genomic: CTATCGGCTGGCTGATACGGGTGCAATTGTATCACTGTTAAGTAGGCTAGgtaggtaaac ... ataattgcagCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTC
EST: gi|17400168|gb|BM176950.1|BM176950
EST:     CACTGTTAAGTAGGCTAG                         CAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTC
genomic: CACTGTTAAGTAGGCTAGgtaggtaaac ... ataattgcagCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTC
EST: gi|17153026|gb|BM142959.1|BM142959
EST:     CTATCGGCTGGCTGATACGGGTGCAATTGTATCACTGTTAAGTAGGCTAG                         CAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTC
genomic: CTATCGGCTGGCTGATACGGGTGCAATTGTATCACTGTTAAGTAGGCTAGgtaggtaaac ... ataattgcagCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtgatggatgatagttgctttttatcttaaacagttccttcataattgcagCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTCAACTAAGAGTTGTGAAAGCCCTCAGGGAATATCGAAATCTTTATTCTGT
                                      ttccttcat  CT-rich tract
                      tttttatcttaaaca  TA-rich tract