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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttgatttcttgaatatacattcattggaggattcctctacatcatattgcatttatatttctgttttttttaacagATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCTCCTAAAGTAGCATCAGTACAAGTCATTGTGATTCCTGTGCCTTACAAAG

Basic information

species Glycine max
transcript GLYMA03G38340.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38340.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G62120.2 (Arabidopsis thaliana), 3'ss of exon 8
gtaagctttgatttcttgaatatacattcattggaggattcctctacatcata-ttgc--atttatatttctgttttttttaacagATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCTCCTAAAGTAGCATCAGTACAAGTCATTGTGATTCCTGTGCCTTACAAAG
        | | | |||| |  ||| |  |||       || | | |   | |  ||   | ||||  || |      ||| | |||| || || ||| | |||  |||||| |||||||| ||  ||||||| ||||||||||| ||||| || |||||  ||||||||||||| || |||||||
-------gtaaatacttggaagtacttagattatttttctcatgtgctctacaactgttaacttatcattttcaaaccttttatagATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTCCTGTTCCCTACAAAG

upper sequence: GLYMA03G38340.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0005g02620.t01 (Vitis vinifera), 3'ss of exon 9
-----------------gtaagctttgatttcttgaatatacattcattggaggattcctctacatcatattgcatttatatttctgttttttttaacagATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCTCCTAAAGTAGCATCAGTACAAGTCATTGTGATTCCTGTGCCTTACAAAG
                 | || | |  | |       ||     | ||  ||       | |  ||  |  |   | ||| ||||   |  | |   ||||| || || ||||| ||||||||||| |||||||| || || ||  | || |||||||||||||| || ||| | |||||| ||||||||||||  ||||
ctaaagtataattcaaggcaaacatgtaatgtaattctaacagctaatgagattggatttttgaatgctgatttctctatctttccaatcatatctgcagATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCACCTAAAGTAGCATCTGTCCAAATTATTGTGGTTCCTGTGCCTTTTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404914|gb|EV274728.1|EV274728
EST:     GAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACT                         ATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCT
genomic: GAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTgtaagctttg ... tttttaacagATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattggaggattcctctacatcatattgcatttatatttctgttttttttaacagATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCTCCTAAAGTAGCATCAGTACAAGTCATTGTGATTCCTGTGCCTTACAAAG
                                  tatttctgtttttttt  CT-rich tract
                      atattgcatttatatt  TA-rich tract