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...cttgattcttgacaatttctcatagaagtattgtaattaatgattggctggtatattattatttctggtggtgcctttcaacccggtttgttctgtttagGTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATCAAGCAATTGGGTAACTGTGACCTATCTGGAATGAGTGATCCTCACG
species | Glycine max |
transcript | GLYMA03G36910.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGCAAGAAAAAAGGAGGGAGCCTTTTACATATGGACAAGCAAAGAG GTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTEST: gi|208214330|gb|GE013347.1|GE013347
genomic: GAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAAGCAAAGAGgtatttcatc ... ttctgtttagGTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATT
EST: GAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAAGCAAAGAG GTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACEST: gi|208079917|gb|GD874145.1|GD874145
genomic: GAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAAGCAAAGAGgtatttcatc ... ttctgtttagGTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTAC
EST: GAGCTGCAAGAAAAAAGGAGGGAGCCTTTTACATATGGACAAGCAAAGAG GTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTEST: gi|151394229|gb|EV264100.1|EV264100
genomic: GAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAAGCAAAGAGgtatttcatc ... ttctgtttagGTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATT
EST: GAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAAGCAAAGAG GTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTAC
genomic: GAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAAGCAAAGAGgtatttcatc ... ttctgtttagGTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTAC
ggctggtatattattatttctggtggtgcctttcaacccggtttgttctgtttagGTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATCAAGCAATTGGGTAACTGTGACCTATCTGGAATGAGTGATCCTCACG
tttgttct CT-rich tract
tatattattatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgattcttgacaatttctcatagaagtattgtaattaatgattggctggtatattattatttctggtggtgcctttcaacccggtttgttctgtttagGTTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATCAAGCAATTGGGTAACTGTGACCTATCTGGAATGAGTGATCCTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - -cttgaca
- - - - - - - - - - - - - - - - - - - - - - tggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaaccc