1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atctctattaattatgataattatgcgccacaacactttcttagactcgtgtttcttttcctttgtcaattgtgcttgatgtctgtttttttggcaacagTTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACATTGTGTGTGCCTTGGACGAAGATCTTCAAGGATGTGCTGCTATGGTCG
species | Glycine max |
transcript | GLYMA03G34050.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGACATTGCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAA TTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACEST: gi|7588625|gb|AW704417.1|AW704417
genomic: ATGACATTGCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAAgtaagtctat ... ttggcaacagTTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGAC
EST: ATGACATTGCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAA TTGCTCANAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACEST: gi|10233308|gb|BE802196.1|BE802196
genomic: ATGACATTGCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAAgtaagtctat ... ttggcaacagTTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGAC
EST: ATGACATTGCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAA TTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACEST: gi|15662534|gb|BI699905.1|BI699905
genomic: ATGACATTGCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAAgtaagtctat ... ttggcaacagTTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGAC
EST: ATGACATTGCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAA TTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGAC
genomic: ATGACATTGCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAAgtaagtctat ... ttggcaacagTTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGAC
ctcgtgtttcttttcctttgtcaattgtgcttgatgtctgtttttttggcaacagTTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACATTGTGTGTGCCTTGGACGAAGATCTTCAAGGATGTGCTGCTATGGTCG
gcttgat putative branch site (score: 5)
tctgttttttt CT-rich tract
tgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctctattaattatgataattatgcgccacaacactttcttagactcgtgtttcttttcctttgtcaattgtgcttgatgtctgtttttttggcaacagTTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACATTGTGTGTGCCTTGGACGAAGATCTTCAAGGATGTGCTGCTATGGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - -ccacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtc