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...caaattgtacagattacagtcataactcacttgtattgttccagaaaagaatttcctttagtttttctgcaatttagtcattttgtttgtcataatgcagAGACAACCAGAGATACATATTTTTTGTGCTCGGTTCAAGGAGCAGACTGGAGATATAGATGGTGCTAGAGCTGCATATCAACTTGTGCATACTGAAACTT
species | Glycine max |
transcript | GLYMA03G32410.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAG AGACAACCAGAGATACATANNNNNNNGTGCTCGGTTCAAGGAGCAGACTGGEST: gi|17400411|gb|BM177193.1|BM177193
genomic: TGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAGgtaatttcat ... cataatgcagAGACAACCAGAGATACATA-TTTTTTGTGCTCGGTTCAAGGAGCAGACTGG
EST: TGTATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAG AGACAACCAGAGATACATATTTTTTGTGCTCGGTTCAAGGAGCAGACTGGA
genomic: TGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAGgtaatttcat ... cataatgcagAGACAACCAGAGATACATATTTTTTGTGCTCGGTTCAAGGAGCAGACTGGA
aaagaatttcctttagtttttctgcaatttagtcattttgtttgtcataatgcagAGACAACCAGAGATACATATTTTTTGTGCTCGGTTCAAGGAGCAGACTGGAGATATAGATGGTGCTAGAGCTGCATATCAACTTGTGCATACTGAAACTT
aatttagtcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaattgtacagattacagtcataactcacttgtattgttccagaaaagaatttcctttagtttttctgcaatttagtcattttgtttgtcataatgcagAGACAACCAGAGATACATATTTTTTGTGCTCGGTTCAAGGAGCAGACTGGAGATATAGATGGTGCTAGAGCTGCATATCAACTTGTGCATACTGAAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - -aactcac
- - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt