1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caacatggtactcagtagcatggatggtcatgggcagggttttgcaaaagtttgtgctctgtttcaaatcctaaatcaatttaataatcttgttgtacagGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATAT
species | Glycine max |
transcript | GLYMA03G28320.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCACAGTCAATGAGTGGAAATG GCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAEST: gi|208234381|gb|GE034964.1|GE034964
genomic: GCACAGTCAATGAGTGGAAATGgtacttaaac ... tgttgtacagGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATA
EST: AATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATG GCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAEST: gi|254316490|gb|GR828027.1|GR828027
genomic: AATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATGgtacttaaac ... tgttgtacagGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATA
EST: ATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATG GCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAEST: gi|8285582|gb|BE023141.1|BE023141
genomic: ATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATGgtacttaaac ... tgttgtacagGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATA
EST: AATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATG GCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATA
genomic: AATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATGgtacttaaac ... tgttgtacagGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATA
aaaagtttgtgctctgtttcaaatcctaaatcaatttaataatcttgttgtacagGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATAT
tcttgtt CT-rich tract
tttcaaatcctaaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacatggtactcagtagcatggatggtcatgggcagggttttgcaaaagtttgtgctctgtttcaaatcctaaatcaatttaataatcttgttgtacagGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
caacatg
- - - - - - - - -gcatgga
- - - - - - - - - - - - -ggtcatg
- - - - - - - - - - - - - - - - ggcaggg
- - - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - -gtttgtg