1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtctgatttctatttattcccccaaattattgttttgatacaaatagcataataaggctttttgtgttgatttcttttttctctcatagGAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATTCAAGTTTTGACTGAACTAGTGGAGAGGCATCGCAGAGCTCGGGCTTCTG
species | Glycine max |
transcript | GLYMA03G25740.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACCTTACTTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAAG GAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATTEST: gi|18039483|gb|BM307777.1|BM307777
genomic: ACCTTACTTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAAGgtctgatttc ... tctctcatagGAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATT
EST: ACCTTACTTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAAG GAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATTEST: gi|15201309|gb|BI424804.1|BI424804
genomic: ACCTTACTTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAAGgtctgatttc ... tctctcatagGAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATT
EST: ACCTTACTTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAAG GAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATT
genomic: ACCTTACTTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAAGgtctgatttc ... tctctcatagGAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATT
ttgatacaaatagcataataaggctttttgtgttgatttcttttttctctcatagGAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATTCAAGTTTTGACTGAACTAGTGGAGAGGCATCGCAGAGCTCGGGCTTCTG
tgttgat putative branch site (score: 4)
ctttttgtgttgattt CT-rich tract
aaatagcataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgatttctatttattcccccaaattattgttttgatacaaatagcataataaggctttttgtgttgatttcttttttctctcatagGAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATTCAAGTTTTGACTGAACTAGTGGAGAGGCATCGCAGAGCTCGGGCTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT