1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cattttaattccattatttaatatcattatctatcagaaattctttcctaaatacttcttaactgttaccaccttgaattattctttcttattttataagCTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAG
species | Glycine max |
transcript | GLYMA03G23870.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCT CTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAACEST: gi|22525661|gb|BU084472.1|BU084472
genomic: CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCTgtatgtttgt ... attttataagCTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC
EST: CCAGCATTCACCAGGAAAAAGTCAGCAACTTAATACTCCTTAATCCGCCT CTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAACEST: gi|23053050|gb|BU577541.1|BU577541
genomic: CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCTgtatgtttgt ... attttataagCTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC
EST: CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCT CTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC
genomic: CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCTgtatgtttgt ... attttataagCTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC
tcctaaatacttcttaactgttaccaccttgaattattctttcttattttataagCTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAG
tcttaac putative branch site (score: 2)
ttattctttcttattt putative PPT
ttgaattattctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttaattccattatttaatatcattatctatcagaaattctttcctaaatacttcttaactgttaccaccttgaattattctttcttattttataagCTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacctt