1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaataaaaactaacttaaatatttattcattctcttctatttcaatgcattcctgagacatttttgttaccaaaatcttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGAGCTCCAAAGCCTTGAAGGTTGCCTGTAATCTAAACAATGCAGCATGCA
species | Glycine max |
transcript | GLYMA03G21690.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAG GCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGEST: gi|58014983|gb|CX701725.1|CX701725
genomic: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
EST: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAG GCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGEST: gi|192333549|gb|FK026850.1|FK026850
genomic: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
EST: CATTATTTAAAGCTGGTAAATATGCAAGAGCCTCTAAAAGATACGAGAAG ACTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGGAGEST: gi|193483590|gb|FK450635.1|FK450635
genomic: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
EST: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAG GCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGEST: gi|192316141|gb|FK011584.1|FK011584
genomic: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
EST: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAG GCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGEST: gi|192319168|gb|FK009108.1|FK009108
genomic: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
EST: AAAGATACGAGAAG GCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGEST: gi|6666583|gb|AW278042.1|AW278042
genomic: AAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
EST: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAG GCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGEST: gi|57574341|gb|CX547316.1|CX547316
genomic: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
EST: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAG GCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGEST: gi|192316140|gb|FK011583.1|FK011583
genomic: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
EST: TTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAG GCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGEST: gi|10254863|gb|BE822629.1|BE822629
genomic: TTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
EST: CATTATTTAAAGNNGGTAAATATGCAAGAGCNTCTAAAAGATACGAGAAG GCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
genomic: CATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATACGAGAAGgtaataaaaa ... cttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAG
ctcttctatttcaatgcattcctgagacatttttgttaccaaaatcttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGAGCTCCAAAGCCTTGAAGGTTGCCTGTAATCTAAACAATGCAGCATGCA
tcttatc CT-rich tract
atttttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaaaactaacttaaatatttattcattctcttctatttcaatgcattcctgagacatttttgttaccaaaatcttatcacagGCTGTAAAGTTCATAGAGTACGATACTGCCTTTAGCGAAGAGGAGAAGAAGAGCTCCAAAGCCTTGAAGGTTGCCTGTAATCTAAACAATGCAGCATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG