1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgtctctgacagaggatacctatggccaagacaaataaataaataaattaaactctagcattagttacttatctatatcttatactttttttttttcagTTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGCTTATCTTATTTAATGAATGACATGGCACAAGAAGCCCTTGGGGATGCAA
species | Glycine max |
transcript | GLYMA03G15830.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGCTTTTAGAGCTAAGGACTTTGTTACTGCCATTGACTGCTACACTCAA TTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGCEST: gi|151395783|gb|EV265660.1|EV265660
genomic: CTGCTTTTAGAGCTAAGGACTTTGTTACTGCCATTGACTGCTACACTCAAgtaagaggat ... tttttttcagTTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGC
EST: CTGCTTTTAGAGCTAAGGACTTTGTTACTGCCATTGACTGCTACACTCAA TTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGCEST: gi|11689140|gb|BF596816.1|BF596816
genomic: CTGCTTTTAGAGCTAAGGACTTTGTTACTGCCATTGACTGCTACACTCAAgtaagaggat ... tttttttcagTTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGC
EST: CTGCTTNTAGAGCTAAGGACTTTTTTACTGCCATTGACTGCTACACTCAA TTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGCEST: gi|14125208|gb|BG789646.1|BG789646
genomic: CTGCTTTTAGAGCTAAGGACTTTGTTACTGCCATTGACTGCTACACTCAAgtaagaggat ... tttttttcagTTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGC
EST: CTGCTTTTAGAGCTAAGGACTTTGTTACTGCCATTGACTGCTACACTCAA TTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGC
genomic: CTGCTTTTAGAGCTAAGGACTTTGTTACTGCCATTGACTGCTACACTCAAgtaagaggat ... tttttttcagTTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGC
aaattaaactctagcattagttacttatctatatcttatactttttttttttcagTTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGCTTATCTTATTTAATGAATGACATGGCACAAGAAGCCCTTGGGGATGCAA
tatcttatactttttt CT-rich tract
attagttacttatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtctctgacagaggatacctatggccaagacaaataaataaataaattaaactctagcattagttacttatctatatcttatactttttttttttcagTTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGCTTATCTTATTTAATGAATGACATGGCACAAGAAGCCCTTGGGGATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -tctgaca
- - - - - - - - - - - - - ccaagac
- - - - - - - - - - - - - - - - -aaataaa