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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtctggaatcatgaatatattgcatgtgttatatcatatattgcatcatttacatgttaaccttggttatgtggaactgcatgtcaaatggggggcctcaagaaatgcttttggttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACACCCCAAGAACAAGATTGAGAGACAAAAACCCTTTGATTTTGCTTTTGATC

Basic information

species Glycine max
transcript GLYMA03G07420.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208273608|gb|GE065910.1|GE065910
EST:     AAAGAAGAAGAAAG                         GTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACAC
genomic: AAAGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACAC
EST: gi|31471537|gb|CD413565.1|CD413565
EST:     GGAAAGAAGAAGAAAG                         GTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACAC
genomic: GGAAAGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACAC
EST: gi|208331945|gb|GE126054.1|GE126054
EST:     AAGGCGGTGGAAAGAAGTTAAGTAAAG                         GTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACA
genomic: AAGGCGGTGGAAAGAAG--AAG-AAAGgtagtctgga ... ttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACA
EST: gi|193425640|gb|FK387351.1|FK387351
EST:     GCGGTGGAAAGAAGAAGAAAG                         GTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGGTGCTACAC
genomic: GCGGTGGAAAGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACAC
EST: gi|193364714|gb|FK330129.1|FK330129
EST:     AGAAGAAGAAAG                         GTAAGTTAAGGGGGTCTAGAAGCTGAACCAATGGATGCAACAAATGATGCT
genomic: AGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAG--AAGGGGG-C-AGAAGCTGAACCAATGGATGCAACAAATGATGCT
EST: gi|207832932|gb|GD801312.1|GD801312
EST:     AGAAGAAGAAAG                         GTAAGTTAAGGGGGTCTAGAAGCTGAACCAATGGATGCAACAAATGATGCT
genomic: AGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAG--AAGGGGG-C-AGAAGCTGAACCAATGGATGCAACAAATGATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggaactgcatgtcaaatggggggcctcaagaaatgcttttggttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACACCCCAAGAACAAGATTGAGAGACAAAAACCCTTTGATTTTGCTTTTGATC
                              aagaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagtctggaatcatgaatatattgcatgtgttatatcatatattgcatcatttacatgttaaccttggttatgtggaactgcatgtcaaatggggggcctcaagaaatgcttttggttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACACCCCAAGAACAAGATTGAGAGACAAAAACCCTTTGATTTTGCTTTTGATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC