1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatgaattgaatttttgttacttttgaactttttcatgtgattagcactgtttctgggtatcaaacagtacattcaatattttgatatgaattatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGGAACTGTAAATATTAAGACAAAGGAGATAATCTAAATTGATATATAAAT
species | Glycine max |
transcript | GLYMA03G04500.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACCATG ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGEST: gi|27445915|gb|CA953038.1|CA953038
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAGAAGTTCGTGEST: gi|254322493|gb|GR837907.1|GR837907
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGEST: gi|193372010|gb|FK334625.1|FK334625
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAAGAGCAGGAEST: gi|208110383|gb|GD911811.1|GD911811
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGA
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAEST: gi|208055198|gb|GD853719.1|GD853719
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCA
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGEST: gi|193362081|gb|FK326487.1|FK326487
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGEST: gi|208049718|gb|GD847081.1|GD847081
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAGGAGCAGGAGCAGTGGTCTGGCAEST: gi|31455890|gb|CD397918.1|CD397918
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCA
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGATAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGEST: gi|254316348|gb|GR827885.1|GR827885
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGEST: gi|208251842|gb|GE045561.1|GE045561
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: AGTTCAAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAG-AAAGTTCGTGEST: gi|208025200|gb|GD823864.1|GD823864
genomic: AGTTC-AGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG ATTGCTGTTTCAAGAAAG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAG
cactgtttctgggtatcaaacagtacattcaatattttgatatgaattatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGGAACTGTAAATATTAAGACAAAGGAGATAATCTAAATTGATATATAAAT
ttttgat putative branch site (score: 4)
tacattcaatattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgaattgaatttttgttacttttgaactttttcatgtgattagcactgtttctgggtatcaaacagtacattcaatattttgatatgaattatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGGAACTGTAAATATTAAGACAAAGGAGATAATCTAAATTGATATATAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - -tcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatatg