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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaatcagttttagttcatatagcaaactcaaacttttagaattgatatttaatcacctattaagcagGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCC

Basic information

species Glycine max
transcript GLYMA03G04330.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G04330.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv08s0058g01300.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------------------------------gtaacaatcagttttagttcatat---agcaaactcaaacttt-tagaattgatatttaa-tcacctattaagcagGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCC
                                                  |   || ||   | ||||   ||   |||||||    |   | ||  ||| |||| ||| | |   | ||| ||||| || | || ||||   || || |||||  |||||||||||||||||| || ||| ||||||  |||||| | ||||||| ||||||||||||||||| 
gtagtcaacttcattgatgtaactaactcttatatttgcatccacacacttggaaaacaaagtgagttttcatgttagcaaacctggatcatataatattaatatataaattattaactaaacagGACACCCAACTATCTGCCATTCCTAATGGCGCTCATTCAAGTGAAACTTTCTTTTCGGGTGTTATTGAGAACCAACCTATAATAAGTGGTTACTCTGGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcatatagcaaactcaaacttttagaattgatatttaatcacctattaagcagGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCC
                                  atttaat  putative branch site (score: 4)
                 aaacttttagaattga  TA-rich tract