Sequence
atgc intronic sequence ATGC exonic sequence...gaactttttcagaatgcttgaatgtgatcctacagttagctattctgcaaatctgacaagattttttcgcttaatatttctcattttgattatgttgtagACGTGGATGAGTGCAAAGAGAAATTGGCGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCTCATGTAGTGATGGTTTGTT
Basic information
species | Glycine max |
transcript | GLYMA03G00510.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G00510.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G52850.1 (Arabidopsis thaliana), 3'ss of exon 9
gaactttttcagaatgcttgaatgtgatcctacagttagctattctgcaaatctgacaagattttttcgcttaatatt-tctcattttgatt--atgttgtagACGTGGATGAGTGCAAAGAGAAATTGGCGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCTCATGTAGTGATGGTTTGTT
| |||| || | ||| || || | | | | || | || | | || | | |||||||| |||| |||| ||||| ||||||||||| ||| || |||||||||||||||||| |||| ||||| || |||||||||||||||||| || || | |||||| |
---tatcagtggaattttttattgtactcaatcaaagaagtgagatcattgttaaacgtcaaattcaaattcataatcatattcttttgattgaatgtgttagATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCTGCAGCAACGGTTTGCT
upper sequence: GLYMA03G00510.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 9
-----gaactttttcagaatgcttgaatgtgatcctacagttagctattctgcaaatctgacaagattttttcgcttaatatttctcattttgattatgttgtagACGTGGATGAGTGCAAAGAGAAATTGGCGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCTCATGTAGTGATGGTTTGTT
|| ||| | ||| | | | || | | | | || | |||||| ||| || ||| || || | | | || |||| ||| | || ||||| || || | || ||| | || ||||||||| ||||||| |||||||||||||||||||| ||| || |||| ||| ||
cgctagatgcatttttcatctcttcattcataaccaattctcctttgacattcata-ctgaca-gatggttctat---gcattatcaatgtttactgttttatagATGTGAACGAATGCAAGGACAAGGTTGCCTGCAATTGTCCAGAGTGCAAATGCAAGAATACCTGGGGAAGTTATGAGTGCAGCTGCAGTGGCAATTTATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaaatctgacaagattttttcgcttaatatttctcattttgattatgttgtagACGTGGATGAGTGCAAAGAGAAATTGGCGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCTCATGTAGTGATGGTTTGTT
ttaatatttctcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaactttttcagaatgcttgaatgtgatcctacagttagctattctgcaaatctgacaagattttttcgcttaatatttctcattttgattatgttgtagACGTGGATGAGTGCAAAGAGAAATTGGCGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCTCATGTAGTGATGGTTTGTT
- - - - - -gaatgct
- - - - - - - - - -gaatgtg
- - - - - - - - - - - - - -tcctaca
- - - - - - - - - - - - - - - - - - - - - ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgacaag