Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtatattggaatggagcgaatatatatttttaaatagattcttctaaactgaatgttcttagtttaaatttaattgttttaattgacagCTATTTGTTGCAAATCAAAATAAGCCTCCTGAGGTTGTCAGCATCCTTGTTACCAACAAACATAAGCTTTTGCAATTTTTGGACAACTTCAATAATGACA

Basic information

species Glycine max
transcript GLYMA02G47710.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47710.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0057g00410.t01 (Vitis vinifera), 3'ss of exon 9
gtgtatattggaatggagcgaatatatatttttaaatagattcttctaaactga--atgttcttagtttaaatttaattgttttaatt---gacagCTATTTGTTGCAAATCAAAATAAGCCTCCTGAGGTTGTCAGCATCCTTGTTACCAACAAACATAAGCTTTTGCAATTTTTGGACAACTTCAATAATGACA
||||    || |||    |  |      ||||  | |   || || ||   | |  |  |||| |  ||   ||   |  |||| |||   || ||||||||||||||||||||||||||||||||||  | |||||||| ||||| || || | |   || ||  | | ||| || | | ||||||| | ||| |
gtgtcatatgaaatttgactca-----gttttagagtgcctttttttattttaatcacattctaaagtttccttctctcatttttattactgatagCTATTTGTTGCAAATCAAAATAAGCCTCCTGAAATCGTCAGCATACTTGTCACAAATAGAAGCAAACTCCTACGATTCTTTGGCGACTTCAACATTGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagattcttctaaactgaatgttcttagtttaaatttaattgttttaattgacagCTATTTGTTGCAAATCAAAATAAGCCTCCTGAGGTTGTCAGCATCCTTGTTACCAACAAACATAAGCTTTTGCAATTTTTGGACAACTTCAATAATGACA
                                       ttgtttt  CT-rich tract
               tgaatgttcttagttt  TA-rich tract