1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atcagcttggcctatttctgttctgttcactactattctatatttgttgtacatactgtggtactgagaggtcataacttatggactttgcactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTTGGTTCAAGACCCAGCCCTGCTAGGCCAGTTAGTTCCAGTAAGTCAGGAG
species | Glycine max |
transcript | GLYMA02G46450.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGG GATCAGAAAAAGCATCACTAGCAGCGAAACACGGAACAAGAAACCATCTTTEST: gi|26048331|gb|CA784835.1|CA784835
genomic: AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGGgtaagtaaca ... cactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
EST: AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGG GATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTTEST: gi|208182585|gb|GD980808.1|GD980808
genomic: AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGGgtaagtaaca ... cactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
EST: ACATGAACGGGAAGAGGAAAAACGGAGGATGAGG GATCAGAAAAAGCATCACGAGCAGCGAAACACAGAACAAGAAACCATCTTT
genomic: ACATGAACGGGAAGAGGAAAAACGGAGGATGAGGgtaagtaaca ... cactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
gttgtacatactgtggtactgagaggtcataacttatggactttgcactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTTGGTTCAAGACCCAGCCCTGCTAGGCCAGTTAGTTCCAGTAAGTCAGGAG
tcataac putative branch site (score: 2)
ataacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagcttggcctatttctgttctgttcactactattctatatttgttgtacatactgtggtactgagaggtcataacttatggactttgcactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTTGGTTCAAGACCCAGCCCTGCTAGGCCAGTTAGTTCCAGTAAGTCAGGAG
- cagcttg
- - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - actgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactttg