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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcagcttggcctatttctgttctgttcactactattctatatttgttgtacatactgtggtactgagaggtcataacttatggactttgcactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTTGGTTCAAGACCCAGCCCTGCTAGGCCAGTTAGTTCCAGTAAGTCAGGAG

Basic information

species Glycine max
transcript GLYMA02G46450.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813527|gb|BI785802.1|BI785802
EST:     AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGG                         GATCAGAAAAAGCATCACTAGCAGCGAAACACGGAACAAGAAACCATCTTT
genomic: AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGGgtaagtaaca ... cactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
EST: gi|51334691|gb|CO978557.1|CO978557
EST:     AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGG                         GATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
genomic: AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGGgtaagtaaca ... cactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
EST: gi|26048331|gb|CA784835.1|CA784835
EST:     AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGG                         GATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
genomic: AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGGgtaagtaaca ... cactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
EST: gi|10843940|gb|BF067293.1|BF067293
EST:     AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGG                         GATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
genomic: AATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGGgtaagtaaca ... cactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT
EST: gi|208182585|gb|GD980808.1|GD980808
EST:     ACATGAACGGGAAGAGGAAAAACGGAGGATGAGG                         GATCAGAAAAAGCATCACGAGCAGCGAAACACAGAACAAGAAACCATCTTT
genomic: ACATGAACGGGAAGAGGAAAAACGGAGGATGAGGgtaagtaaca ... cactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtacatactgtggtactgagaggtcataacttatggactttgcactctgtagGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTTGGTTCAAGACCCAGCCCTGCTAGGCCAGTTAGTTCCAGTAAGTCAGGAG
                          tcataac  putative branch site (score: 2)
                            ataacttat  TA-rich tract