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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacgtgattctcctttctctatatccatatatgtatatgtcacattgcttatatctgatttatgaagaaataattttaaatgcatttatttattttatttaatattctttgtaaaattgtaggatgattaataggatgatataacatatttttaaaatgttattaatctttgtcttgtttttcccataaatgttgatagGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATG

Basic information

species Glycine max
transcript GLYMA02G46350.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46350.2 (Glycine max), 3'ss of exon 9
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 3'ss of exon 9
gcacgtgattctcctttctctatatccatatatgtatatgtcacattgcttatatctgatttatgaagaaataattttaaatgcatttatttattttatttaatattctttgtaaaattgtaggatgattaataggatgatataacat-atttttaaaatgttattaatctttgtcttgtttttcccataa-atgttgatagGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATG
                                                                    || | ||   |  |     ||| |  ||    |  | |    |    | ||     ||  | || || |||  |  |  | | |  | ||  || |   | |||| | |   ||      | | || ||   |||||| ||||||||||| ||||| || ||||| || |||||||||||||||
------------------------------------------------------------------gcaagttatcc-atcttatcctatcttcttctccttctgtgacctaactagtttcgatattttaaaaagtatgggaacaggtcaatgattaaccgtaaaacagctttatataacttcaattgtcatattttttcagGAGCTCATATTGGACCAGAGCCGACTACTGACAGATTTGTTGTTGTCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatttttaaaatgttattaatctttgtcttgtttttcccataaatgttgatagGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATG
                tattaat  putative branch site (score: 2)
     ttttaaaatgttatta  TA-rich tract