1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatcacgtgaaagtcttggacatttgtggcctaaatacattcttgctgattttgaaatgttttcatactgatatacattgcaaactgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
species | Glycine max |
transcript | GLYMA02G44690.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATG GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTGEST: gi|21994166|gb|BQ785694.1|BQ785694
genomic: AAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATGgtaatcacgt ... caaactgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
EST: AAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATG GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
genomic: AAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATGgtaatcacgt ... caaactgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
tacattcttgctgattttgaaatgttttcatactgatatacattgcaaactgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
tactgat putative branch site (score: 2)
attttgaaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcacgtgaaagtcttggacatttgtggcctaaatacattcttgctgattttgaaatgttttcatactgatatacattgcaaactgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA