1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtacattttccaacacttatagtaaaccaacaatcagcagatgtttcacattattttactcttatcagacacaattttttactcttactttttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGAAGTGAGCTATCTT
species | Glycine max |
transcript | GLYMA02G42680.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATCEST: gi|214007942|gb|DB986489.1|DB986489
genomic: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCTgtaagtattg ... tttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATC
EST: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATCEST: gi|214008127|gb|DB988500.1|DB988500
genomic: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCTgtaagtattg ... tttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATC
EST: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATCEST: gi|193446484|gb|FK415815.1|FK415815
genomic: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCTgtaagtattg ... tttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATC
EST: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATCEST: gi|209729118|gb|BW660015.1|BW660015
genomic: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCTgtaagtattg ... tttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATC
EST: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATCEST: gi|209717560|gb|BW671482.1|BW671482
genomic: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCTgtaagtattg ... tttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATC
EST: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATCEST: gi|209726201|gb|BW659566.1|BW659566
genomic: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCTgtaagtattg ... tttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATC
EST: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCT ATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATC
genomic: TGTTCACCCCTGATGATATTGCCTATGTTAAGGAAGCTGGTGTTAAAGCTgtaagtattg ... tttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATC
tcacattattttactcttatcagacacaattttttactcttactttttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGAAGTGAGCTATCTT
ctcttac putative branch site (score: 3)
caattttttactctta CT-rich tract
acaattttttactctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattttccaacacttatagtaaaccaacaatcagcagatgtttcacattattttactcttatcagacacaattttttactcttactttttttttcagATATTGGTTGGAGAGTCTATTGTAAAACAAAATGATCCTGGGAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGAAGTGAGCTATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - -ccaacac
- - - - - - - - - - - - - ccaacaa
- - - - - - - - - - - - - - - - - - gcagatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagacac