1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgaattttttattttattggcaatttaaaacacaaattggcacgtctattttttttgtatattataattagttttctttcttttgtttctgttcttcaagAGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAG
species | Glycine max |
transcript | GLYMA02G41810.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGCTTTAGTAACAG AGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAGEST: gi|208269254|gb|GE066020.1|GE066020
genomic: CTGCTTTAGTAACAGgtataccatc ... gttcttcaagAGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAG
EST: GCATGCTAAGAATATATCTTGCGGTGCTCGCCACACTGCTTTAGTAACAG AGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAGEST: gi|9985400|gb|BE659508.1|BE659508
genomic: GCATGCTAAGAATATATCTTGCGGTGCTCGCCACACTGCTTTAGTAACAGgtataccatc ... gttcttcaagAGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAG
EST: CTGCTTTAGTAACAG AGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAG
genomic: CTGCTTTAGTAACAGgtataccatc ... gttcttcaagAGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAG
ctattttttttgtatattataattagttttctttcttttgtttctgttcttcaagAGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAG
ttagttttctttcttt CT-rich tract
ttttttgtatattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaattttttattttattggcaatttaaaacacaaattggcacgtctattttttttgtatattataattagttttctttcttttgtttctgttcttcaagAGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - -acacaaa
- - - - - - - - - - - - - - - - - - -tggcacg