Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttccagaaatgctcttcataacttatgttcttcccatgtttcagaaaacttttgatatctatttgtttgctaaaattttatatttttcaattttccagGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTTAAGCATTGATGCTCACAATGAATTATCTTGGTCTTTAGGACGCCAGTTC

Basic information

species Glycine max
transcript GLYMA02G36960.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193481278|gb|FK447797.1|FK447797
EST:     AAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAG                         GGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
genomic: AAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGgtgagtgcct ... aattttccagGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
EST: gi|193534111|gb|FK490764.1|FK490764
EST:     ACTCCTCATCATCTTGTAACTTCCTAGCTTGTAG                         GGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
genomic: ACTCCTCATCATC-TG-AAC-TCCTAGCTTGTAGgtgagtgcct ... aattttccagGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
EST: gi|58021429|gb|CX708170.1|CX708170
EST:     AAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAG                         GGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
genomic: AAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGgtgagtgcct ... aattttccagGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
EST: gi|57575838|gb|CX548809.1|CX548809
EST:     AAGGTTGAAAATGTCACCAACTCCTCATCATTTGAACTCCTAGCTTGTAG                         GGCCATTATGTCCGTAATAACTTATAACGGTTATTTCCAGGAATACAACTT
genomic: AAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGgtgagtgcct ... aattttccagGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
EST: gi|58025341|gb|CX712082.1|CX712082
EST:     AAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAG                         GGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
genomic: AAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGgtgagtgcct ... aattttccagGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
EST: gi|51338422|gb|CO982288.1|CO982288
EST:     AAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAG                         GGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT
genomic: AAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGgtgagtgcct ... aattttccagGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaacttttgatatctatttgtttgctaaaattttatatttttcaattttccagGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTTAAGCATTGATGCTCACAATGAATTATCTTGGTCTTTAGGACGCCAGTTC
                        tgctaaa  putative branch site (score: 2)
                                       tttttcaattttcc  putative PPT
           atatctatttgtttgc  TA-rich tract