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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatgattttatatttcatattatcaattcatatttgtggatttcaatgcaaataaagtattcctatgttttttaattatatttggacatatgtgccagGGATTTACTTACCCTGTGGCAGAGCACTTCCTGGAAGATGTGTTGGAGAAAACTCGATACAGCATCAAGTCAGATTTTGACAATTTTGAGGGGAATTCAA

Basic information

species Glycine max
transcript GLYMA02G35240.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 7
---gtatgcatgattttatatttcatattatcaattcatatttgtggatttcaatgcaaataaagtattcctatgttttt-taattatatttggacatatg-tgccagGGATTTACTTACCCTGTGGCAGAGCACTTCCTGGAAGATGTGTTGGAGAAAACTCGATACAGCATCAAGTCAGATTTTGACAATTTTGAGGGGAATTCAA
    | || ||  |||||  | |     |       ||| | | | ||  | | |  | | |   ||||  | | ||| |  |||  |||      ||||| || ||||||||||||| ||| |||||||||   || ||||||||| | |||||||||||||| || |  ||||||||||| |||||||| ||| | || ||  |||
gtattgtggatcttttta-gtcttgagctgctgggacatgtgttttgaacttattcaacaca---tatttgtgtatttatgcaatattatccttcaatatgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAAACTCGTTATAATATCAAGTCAGAGTTTGACAACTTTCACGGAAACCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgcaaataaagtattcctatgttttttaattatatttggacatatgtgccagGGATTTACTTACCCTGTGGCAGAGCACTTCCTGGAAGATGTGTTGGAGAAAACTCGATACAGCATCAAGTCAGATTTTGACAATTTTGAGGGGAATTCAA
                          ttttaat  putative branch site (score: 3)
      aaataaagtattccta  TA-rich tract