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gtaaattgtttatggctcaattatatttatgtttgcaatgcctgtttcaatagttaccataatttgtgattctttctcagTTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAATATAATGCTGTTTTTGT
species | Glycine max |
transcript | GLYMA02G16860.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATG TTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGCEST: gi|192334195|gb|FK026576.1|FK026576
genomic: GGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATGgtaaattgtt ... tctttctcagTTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGC
EST: GGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATG TTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGCEST: gi|192323713|gb|FK016019.1|FK016019
genomic: GGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATGgtaaattgtt ... tctttctcagTTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGC
EST: GGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATG TTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGCEST: gi|18722937|gb|BM523427.1|BM523427
genomic: GGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATGgtaaattgtt ... tctttctcagTTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGC
EST: CTAAGAAGTCGGGACAAAATAATGATG TTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGC
genomic: CTAAGAAGTCGGGACAAAATAATGATGgtaaattgtt ... tctttctcagTTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGC
tttatgtttgcaatgcctgtttcaatagttaccataatttgtgattctttctcagTTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAATATAATGCTGTTTTTGT
ttctttctc CT-rich tract
ataatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattgtttatggctcaattatatttatgtttgcaatgcctgtttcaatagttaccataatttgtgattctttctcagTTGAAAAGGCTGACGGCTTATCAGATGGTGTTAAAAAGGATCGCTTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAATATAATGCTGTTTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT