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...gatgatacgtgcacagtttctaatttcgtaccgctagttttgtaaattgttaataaacttgcatatgagtaatggttgttctttttaatatatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG
species | Glycine max |
transcript | GLYMA02G16010.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAACATGA-GAAATATTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|27424963|gb|CA936483.1|CA936483
genomic: TACCATGAGGACA-CCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|192311298|gb|FK003769.1|FK003769
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAEST: gi|192314162|gb|FK011534.1|FK011534
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCA
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAGGTCGGGCTCTCAAGCAGAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|27426595|gb|CA938115.1|CA938115
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|192314161|gb|FK011533.1|FK011533
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAGGTCGGGCTCTCAAGCAGAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|14258668|gb|BG881576.1|BG881576
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTANGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAACAAGGGTTEST: gi|214003984|gb|DB985253.1|DB985253
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTT
EST: ATACCATGAGGACAACTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|193526955|gb|FK483305.1|FK483305
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAEST: gi|16997020|gb|BM086392.1|BM086392
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCA
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|6134950|gb|AW133343.1|AW133343
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCANGGGTTTAACAATATGACEST: gi|7286200|gb|AW598687.1|AW598687
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|7286174|gb|AW598661.1|AW598661
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
attgttaataaacttgcatatgagtaatggttgttctttttaatatatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG
ttttaat putative branch site (score: 3)
taatggttgttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgatacgtgcacagtttctaatttcgtaccgctagttttgtaaattgttaataaacttgcatatgagtaatggttgttctttttaatatatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA